Basic Information
Locus ID:
BVRB_5g108750
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ubiquitinyl hydrolase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 20632180 | 20648708 | + | BVRB_5g108750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 117,455.23 Da | 51.44 | 78.01 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 870 | 1021 | 2.29223E-52 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 432 | 1020 | 3.0E-79 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 430 | 1022 | 1.96E-104 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 848 | 1025 | 2.6E-52 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 424 | 656 | 7.0E-63 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 432 | 1023 | 56.182537 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 433 | 448 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 967 | 984 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 410 | - | - |
| Coils | Coil | Coil | 762 | 782 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_010677561.2 | ubiquitin carboxyl-terminal hydrolase 8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9S241 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_009050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology