Basic Information
Locus ID:
BVRB_5g108540
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19825784 | 19827215 | - | BVRB_5g108540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 45,228.50 Da | 39.56 | 104.69 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 44 | 2.06796E-17 | - |
| Pfam | PF04564 | U-box domain | 9 | 82 | 3.1E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 85 | 3.3E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 106 | 386 | 4.07E-17 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 99 | 265 | 4.4E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 89 | 6.1E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 266 | 387 | 1.8E-6 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 80 | 1.2E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 87 | 34.694603 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010677541.1 | E3 ubiquitin-protein ligase PUB23 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QP36 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_157660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology