Basic Information
Locus ID:
BVRB_5g108520
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19790320 | 19791831 | + | BVRB_5g108520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 46,518.77 Da | 43.00 | 104.49 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 7.36304E-23 | - |
| Pfam | PF04564 | U-box domain | 9 | 82 | 4.3E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 177 | 398 | 4.99E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 85 | 2.3E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 129 | 408 | 6.8E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 89 | 7.3E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 12 | 80 | 3.0E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 87 | 34.314236 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010677540.1 | - | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QP36 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_157660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology