Basic Information
Locus ID:
BVRB_5g107290
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 16496323 | 16513329 | - | BVRB_5g107290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 124,655.46 Da | 58.23 | 78.22 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 644 | 700 | 4.81618E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 709 | 1068 | 2.0E-39 | IPR001525 |
| Pfam | PF01426 | BAH domain | 382 | 493 | 3.0E-11 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 661 | 698 | 8.4E-11 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 637 | 707 | 6.23E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 534 | 1068 | 1.5E-80 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 277 | 479 | 2.0E-44 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 537 | 1085 | 9.0E-238 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 864 | 1034 | 9.0E-238 | - |
| SMART | SM00298 | chromo_7 | 644 | 703 | 3.0E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 379 | 494 | 4.0E-19 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 713 | 1065 | 1.8E-33 | IPR001525 |
| PIRSF | PIRSF037404 | DNMT1 | 358 | 511 | 3.4E-6 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 29 | 334 | 330.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 465 | 608 | 7.8E-7 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 689 | 965 | 2.1E-40 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 990 | 1080 | 8.0E-25 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 372 | 494 | 16.572014 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 645 | 698 | 11.833501 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 535 | 1075 | 48.970078 | IPR001525 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1050 | 1068 | - | IPR031303 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 668 | 688 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 715 | 727 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 758 | 772 | 8.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 804 | 817 | 8.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 536 | 552 | 8.4E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 641 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010677406.2 | - | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology