Basic Information
Locus ID:
BVRB_5g105600
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11722394 | 11780472 | + | BVRB_5g105600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 483,275.72 Da | 46.15 | 89.09 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4192 | 4264 | 1.8E-5 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3182 | 3458 | 3.9E-13 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 375 | 2.8E-66 | IPR031646 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2797 | 2939 | 1.0E-7 | IPR010482 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 110 | 1.3E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1958 | 2107 | 4.7E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2185 | 2332 | 1.5E-9 | IPR009291 |
| Pfam | PF00169 | PH domain | 798 | 908 | 1.1E-7 | IPR001849 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 557 | 777 | 4.8E-27 | IPR031642 |
| SUPERFAMILY | SSF50729 | PH domain-like | 791 | 910 | 5.71E-9 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 793 | 912 | 2.0E-7 | IPR011993 |
| SMART | SM00233 | PH_update | 796 | 911 | 3.6E-7 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 795 | 909 | 10.305099 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_019105061.2 | uncharacterized protein LOC104892878 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CD77 | PH domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g105600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology