Basic Information
Locus ID:
BVRB_5g104230
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8985758 | 9001688 | + | BVRB_5g104230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 101,969.31 Da | 46.13 | 76.75 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 733 | 888 | 8.5082E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 887 | 7.9E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 42 | 139 | 3.8E-22 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 20 | 139 | 7.45E-27 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 311 | 889 | 1.04E-109 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 9 | 152 | 3.7E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 627 | 897 | 4.2E-56 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 237 | 1.4E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 299 | 526 | 1.7E-69 | - |
| SMART | SM00695 | dusp | 37 | 142 | 2.0E-25 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 313 | 890 | 58.728901 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 139 | 19.119513 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 832 | 849 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_010676929.2 | ubiquitin carboxyl-terminal hydrolase 10 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LWT9 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology