Basic Information
Locus ID:
BVRB_5g103060
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7064066 | 7068451 | + | BVRB_5g103060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 65,485.99 Da | 28.55 | 88.53 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 208 | 4.10187E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 408 | 590 | 7.66586E-89 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 212 | 4.7E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 578 | 7.6E-16 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 243 | 360 | 1.2E-18 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 220 | 3.04E-44 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 408 | 602 | 1.09E-42 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 238 | 385 | 8.07E-31 | IPR029035 |
| Gene3D | G3DSA:3.40.50.1220 | - | 234 | 395 | 9.2E-39 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 592 | 3.9E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 43 | 219 | 4.9E-60 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 41 | 602 | 9.9E-209 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 467 | 486 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_010676788.2 | pyruvate decarboxylase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMI0 | pyruvate decarboxylase OS=Spinacia oleracea OX=3562 GN=SOVF_162420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology