Basic Information
Locus ID:
BVRB_5g102740
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
CPK13
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 6686040 | 6693924 | - | BVRB_5g102740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 60,245.19 Da | 42.39 | 86.72 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 59 | 317 | 3.81252E-132 | - |
| Pfam | PF13833 | EF-hand domain pair | 384 | 428 | 4.1E-4 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 436 | 499 | 1.3E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 62 | 318 | 7.3E-73 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 341 | 2.56E-83 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 347 | 524 | 1.09E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 327 | 502 | 2.7E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 146 | 326 | 2.2E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 61 | 145 | 9.0E-25 | - |
| SMART | SM00220 | serkin_6 | 60 | 318 | 1.7E-93 | IPR000719 |
| SMART | SM00054 | efh_1 | 437 | 465 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 473 | 501 | 7.2E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 365 | 393 | 0.11 | IPR002048 |
| SMART | SM00054 | efh_1 | 401 | 429 | 19.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 361 | 396 | 13.760229 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 469 | 504 | 14.708673 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 60 | 318 | 45.869789 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 433 | 468 | 15.127104 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 446 | 458 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 482 | 494 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 66 | 89 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 180 | 192 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_010676748.1 | - | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RJG6 | Calcium-dependent protein kinase 13 OS=Spinacia oleracea OX=3562 GN=SOVF_065500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology