Basic Information
Locus ID:
BVRB_5g098720
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1374750 | 1382004 | + | BVRB_5g098720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 36,219.08 Da | 49.58 | 91.33 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09617 | Peptidase_C12_UCH37_BAP1 | 1 | 201 | 1.26277E-112 | - |
| Pfam | PF18031 | Ubiquitin carboxyl-terminal hydrolases | 254 | 299 | 3.6E-20 | IPR041507 |
| Pfam | PF01088 | Ubiquitin carboxyl-terminal hydrolase, family 1 | 2 | 187 | 3.0E-58 | IPR001578 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2 | 204 | 2.19E-60 | IPR038765 |
| Gene3D | G3DSA:3.40.532.10 | - | 1 | 205 | 2.8E-73 | IPR036959 |
| Gene3D | G3DSA:1.20.58.860 | - | 206 | 294 | 5.2E-28 | - |
| PIRSF | PIRSF038120 | Uch | 1 | 315 | 8.7E-116 | IPR017390 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 149 | 159 | 6.3E-8 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 57 | 74 | 6.3E-8 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 21 | 33 | 6.3E-8 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 133 | 144 | 6.3E-8 | IPR001578 |
| Coils | Coil | Coil | 206 | 226 | - | - |
| Coils | Coil | Coil | 240 | 274 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65650.1 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1. | 0 |
| RefSeq | XP_048501175.1 | - | 0 |
| O04482 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UCH2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LWJ7 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8438 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5417 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003883 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24042, Sbi_jg7893 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12155 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010654 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52237, Sgl57495 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005128, gene:ENSEOMG00000005386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005730, CQ.Regalona.r1.5BG0006050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30080670, pistato.v30080730 |
| Apiaceae | Apium graveolens | 1 | Ag2G01222 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G018690, COCNU_10G007490 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710351, gene-LOC103715643, gene-LOC120103645 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1857.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G08390, Ftri9G11165 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G65650.1, AT5G16310.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014049m.g.v1.0, Thhalv10018850m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g20610.v2.2, Sp6g27850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g043190.2N, BniB08g007790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2497 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2636 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0191s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g29180 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036702 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08135, Lb2G08209, Lb4G24670 |
| Poaceae | Echinochloa crus-galli | 8 | AH07.3987, AH08.2407, BH07.3802, BH08.2134, BH08.2579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0150960, gene-QOZ80_2BG0206380 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.5HG0518770.1, HORVU.MOREX.r3.6HG0568820.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_021049, gene-QYE76_026443, gene-QYE76_053556 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G004080, Oco03G025690, Oco04G004030, Oco04G026170 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g08370.1, LOC_Os02g57630.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G324200, gene-BS78_07G230100 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202317, Pt_Chr0502870, Pt_Chr0604541, Pt_Chr0605619 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr13G000540, Chr15G000430, Chr16G019200, Chr17G018120 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G307200, Tel6E01G734100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG020380, gene_TRIDC6AG059120 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G147800.1, TraesCS6A02G402500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb038900_P001, Zm00001eb175830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39775, nbis-gene-42885 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17445, Zma_g23445 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3264, evm.TU.LG16.336 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1347 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20143, nbisL1-mrna-20158, nbisL1-mrna-9769 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13498 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011622 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18547 |
| Salicaceae | Populus euphratica | 2 | populus_peu24441, populus_peu25586 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631615 |
| Solanaceae | Solanum chilense | 1 | SOLCI005925200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031298 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23317_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3085 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31750.v3.1 |