Basic Information
Locus ID:
BVRB_4g089720
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 31568973 | 31577823 | + | BVRB_4g089720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 82,492.23 Da | 39.27 | 91.77 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 53 | 351 | 5.18042E-162 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 374 | 662 | 1.8E-19 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 368 | 668 | 1.6E-34 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 52 | 352 | 4.71E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 366 | 667 | 1.5E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 52 | 350 | 9.7E-37 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 368 | 668 | 28.49918 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 53 | 352 | 33.37936 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_010675854.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RMD9 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology