Basic Information
Locus ID:
BVRB_4g089440
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 30993235 | 30998319 | - | BVRB_4g089440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 58,612.59 Da | 36.25 | 93.68 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 64 | 221 | 1.3E-22 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 398 | 465 | 5.2E-8 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 59 | 222 | 1.14E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 64 | 237 | 5.6E-33 | IPR036465 |
| SMART | SM00327 | VWA_4 | 62 | 236 | 6.7E-22 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 64 | 237 | 18.230421 | IPR002035 |
| Coils | Coil | Coil | 450 | 470 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010675833.1 | E3 ubiquitin-protein ligase WAV3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QQR0 | VWFA domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_152240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology