Basic Information
Locus ID:
BVRB_4g089410
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 30928384 | 30941699 | + | BVRB_4g089410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 101,871.15 Da | 33.16 | 76.66 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01419 | Jacalin-like lectin domain | 36 | 152 | 4.9E-5 | IPR001229 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 343 | 370 | 7.9E-4 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 785 | 804 | 0.031 | IPR011659 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 4 | 151 | 1.51E-10 | IPR036404 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 312 | 838 | 1.7E-27 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 603 | 779 | 9.6E-16 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 308 | 507 | 2.2E-9 | IPR011042 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 153 | 9.4E-14 | IPR036404 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 3 | 155 | 11.449945 | IPR001229 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_010675830.1 | uncharacterized protein LOC104891773 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RPR9 | Peptidase_S9 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_042370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology