Basic Information
Locus ID:
BVRB_4g089400
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 30914904 | 30925593 | + | BVRB_4g089400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 111,478.68 Da | 41.29 | 71.14 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 426 | 450 | 0.0014 | IPR011659 |
| Pfam | PF01419 | Jacalin-like lectin domain | 25 | 149 | 8.6E-11 | IPR001229 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 393 | 873 | 2.75E-25 | - |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 4 | 149 | 7.98E-22 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 4 | 152 | 1.8E-29 | IPR036404 |
| Gene3D | G3DSA:2.120.10.30 | - | 656 | 845 | 2.5E-19 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 388 | 617 | 6.7E-9 | IPR011042 |
| SMART | SM00915 | Jacalin_2 | 14 | 151 | 6.3E-6 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 3 | 151 | 24.374481 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 264 | - | - |
| Coils | Coil | Coil | 154 | 250 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_048498469.1 | uncharacterized protein LOC104891772 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RPR9 | Peptidase_S9 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_042370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology