Basic Information
Locus ID:
BVRB_4g089380
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 30879512 | 30886807 | - | BVRB_4g089380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 58,655.65 Da | 35.40 | 89.14 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 72 | 235 | 2.8E-21 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 411 | 478 | 2.1E-10 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 68 | 241 | 1.27E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 71 | 242 | 3.6E-38 | IPR036465 |
| SMART | SM00327 | VWA_4 | 70 | 240 | 2.5E-19 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 72 | 241 | 18.406527 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 497 | - | - |
| Coils | Coil | Coil | 384 | 407 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010675828.1 | E3 ubiquitin-protein ligase WAV3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXY2 | VWFA domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology