Basic Information
Locus ID:
BVRB_4g083510
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the glycosyltransferase 8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 16451183 | 16459397 | - | BVRB_4g083510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 61,675.54 Da | 38.56 | 108.70 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02537 | GT8_Glycogenin | 37 | 282 | 2.13723E-82 | - |
| Pfam | PF01501 | Glycosyl transferase family 8 | 111 | 144 | 7.6E-6 | IPR002495 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 36 | 283 | 3.26E-44 | IPR029044 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 34 | 285 | 8.9E-58 | IPR029044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18480.1 | plant glycogenin-like starch initiation protein 6. | 0 |
| RefSeq | XP_010675056.1 | inositol phosphorylceramide glucuronosyltransferase 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GWB7 | Inositol phosphorylceramide glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=IPUT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CID3 | Hexosyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g083510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2652 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11564 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006352 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16609, Sbi_jg17057, Sbi_jg61125 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg22881, Seu_jg22884, Seu_jg22887 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008130 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24951, Sgl26988, Sgl30095, Sgl38037 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009134, gene:ENSEOMG00000026948 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011530 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30090780, pistato.v30266470 |
| Apiaceae | Apium graveolens | 1 | Ag5G02882 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011990, COCNU_09G010180 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719910, gene-LOC120104371 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.1040.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri4G15058, Ftri6G17276, Ftri6G30623, FtriNA25251 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18480.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013196m.g.v1.0, Thhalv10020458m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03220.v2.2, Sp6g25840.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g045280.2N, BniB06g058830.2N, BniB07g060090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2411 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2530 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02030 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0109s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2173 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040158 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21753, Lb4G21754 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1581, BH09.1774, CH09.1904 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0310540, gene-QOZ80_4BG0341740 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0181880.1, HORVU.MOREX.r3.6HG0596440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023759, gene-QYE76_047907 |
| Poaceae | Oryza coarctata | 4 | Oco03G015760, Oco04G016380, Oco07G010770, Oco08G010490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g41520.1, LOC_Os04g43700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G159600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0204132, Pt_Chr0204155, Pt_Chr0204157, Pt_Chr0302074 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G008730, Chr25G010940, Chr26G011010, Chr30G010600 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G656100, Tel6E01G437700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG055120, gene_TRIDC2BG057860 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G381700.1, TraesCS2B02G399000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb426690_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37090, nbis-gene-5277 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20053, Zma_g21620 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1298, evm.TU.LG20.1287 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.335, evm.TU.Scaffold_2_RagTag.1886 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3282, nbisL1-mrna-7901 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3167, nbisL1-mrna-8971 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13829, nbisL1-mrna-5381 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.163, evm.TU.utg000012l.218 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005717, Maker00011070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12875, nbisL1-mrna-7741 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16304, nbisL1-mrna-302 |
| Salicaceae | Populus euphratica | 1 | populus_peu16004 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613933, gene-LOC132640139 |
| Solanaceae | Solanum chilense | 1 | SOLCI004011100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015795, gene-LOC107018760 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4928, gene_5559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3331 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24150.v3.1 |