Basic Information
Locus ID:
BVRB_4g082790
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 14800252 | 14805383 | - | BVRB_4g082790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 67,219.81 Da | 49.19 | 96.01 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 76 | 121 | 5.5E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 16 | 56 | 3.1E-17 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 49 | 1.07E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 96 | 527 | 2.3E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 585 | 7.7E-179 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 54 | 2.4E-19 | - |
| SMART | SM00256 | fbox_2 | 18 | 59 | 5.0E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 113 | 137 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 297 | 321 | 610.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 440 | 463 | 460.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 404 | 0.52 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 489 | 510 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 138 | 163 | 220.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010674940.2 | - | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology