Basic Information
Locus ID:
BVRB_4g081330
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11538590 | 11545555 | - | BVRB_4g081330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 97,903.46 Da | 56.64 | 50.70 | -1.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 406 | 433 | 2.6E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 372 | 400 | 2.2E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 365 | 401 | 2.2E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 403 | 434 | 2.3E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 364 | 402 | 5.4E-16 | - |
| SMART | SM00547 | zf_4 | 374 | 398 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 407 | 431 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 405 | 434 | 9.450083 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 372 | 401 | 10.274413 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 376 | 395 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 409 | 428 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 576 | - | - |
| Coils | Coil | Coil | 70 | 90 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology