Basic Information
Locus ID:
BVRB_4g079790
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9354403 | 9360885 | + | BVRB_4g079790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 49,582.33 Da | 46.34 | 80.78 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 85 | 408 | 1.6E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 55 | 443 | 7.33E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 42 | 443 | 6.4E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 270 | 290 | 9400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 300 | 321 | 0.4 | IPR006626 |
| SMART | SM00710 | pbh1 | 220 | 246 | 200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 247 | 268 | 58.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 277 | 290 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010674532.2 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology