Basic Information
Locus ID:
BVRB_4g078300
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
CDKE-1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7298086 | 7308743 | - | BVRB_4g078300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 56,141.45 Da | 45.83 | 80.46 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07842 | STKc_CDK8_like | 46 | 358 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 47 | 358 | 5.5E-68 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 360 | 5.93E-87 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 18 | 132 | 4.0E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 133 | 372 | 8.9E-71 | - |
| SMART | SM00220 | serkin_6 | 47 | 358 | 2.0E-94 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 47 | 358 | 46.760231 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 175 | 187 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 53 | 81 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 498 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63610.1 | cyclin-dependent kinase E;1. significant sequence similarity to plant and animal cyclin-dependent protein kinases, and was classified as an E-type CDK with a SPTAIRE cyclin binding motif in the kinase domain. | 0 |
| RefSeq | XP_010674366.2 | cyclin-dependent kinase E-1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84TI6 | Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana OX=3702 GN=CDKE-1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RFE7 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_072860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39692 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10314 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005497 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17711, Sbi_jg62383 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg955 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007276 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23972, Sgl29151 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011106, gene:ENSEOMG00000028570 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005900, CQ.Regalona.r1.4BG0006060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30133970 |
| Apiaceae | Apium graveolens | 1 | Ag11G03632 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G015260 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703848, gene-LOC103714524, gene-LOC120107158 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.931.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G32861 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004142m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g042440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1666 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1726 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06970 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15750 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1574 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014108 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06391, Lb2G13825, Lb5G27579 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2746, BH01.3078, CH01.3301 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118640, gene-QOZ80_2BG0172390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012990 |
| Poaceae | Oryza coarctata | 2 | Oco19G011280, Oco20G011150 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503438, Pt_Chr0503484 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021600, Chr09G006520, Chr13G018180, Chr15G017580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030070, gene_TRIDC1BG035570 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198100.2, TraesCS1B02G212800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225020_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38209 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1469, evm.TU.LG20.410 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22305 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4348 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20428 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014460 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18194 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6788 |
| Salicaceae | Populus euphratica | 2 | populus_peu03721, populus_peu34565 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618278 |
| Solanaceae | Solanum chilense | 1 | SOLCI000730400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007258 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11966 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2189 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00770.v3.1 |