Basic Information
Locus ID:
BVRB_4g076650
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5505859 | 5512794 | + | BVRB_4g076650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 70,417.17 Da | 55.45 | 75.12 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 224 | 421 | 4.53741E-96 | - |
| CDD | cd18794 | SF2_C_RecQ | 422 | 555 | 4.16673E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 440 | 545 | 1.4E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 558 | 626 | 4.2E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 232 | 401 | 5.4E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 269 | 566 | 6.07E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 422 | 629 | 3.7E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 198 | 421 | 9.7E-83 | IPR027417 |
| SMART | SM00490 | helicmild6 | 464 | 546 | 1.8E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 226 | 430 | 1.7E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 224 | 629 | 3.5E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 238 | 414 | 20.418026 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 436 | 586 | 18.475971 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 202 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_010674161.1 | ATP-dependent DNA helicase Q-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology