Basic Information
Locus ID:
BVRB_4g076250
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5121898 | 5130843 | + | BVRB_4g076250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 121,423.56 Da | 37.76 | 83.93 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 482 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 375 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 877 | 910 | 0.038 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 798 | 1058 | 5.04E-36 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 332 | 656 | 3.66E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 331 | 395 | 1.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 929 | 1068 | 2.6E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 402 | 704 | 1.6E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 705 | 928 | 1.6E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 871 | 910 | 2.2E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.5E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 484 | 525 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 436 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 614 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 8.5E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 868 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 960 | 1002 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 789 | 825 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 571 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 878 | 919 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 350 | 385 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 878 | 913 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 592 | 623 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.359221 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 469 | 483 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1075 | 1096 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_010674104.2 | - | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CQI2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology