Basic Information
Locus ID:
BVRB_4g071880
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 906791 | 911152 | - | BVRB_4g071880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 66,511.71 Da | 45.61 | 82.31 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 49 | 4.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 72 | 8.76E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 134 | 353 | 3.53E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 44 | 5.3E-7 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 113 | 333 | 2.2E-12 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_048500434.1 | F-box protein CPR1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KPU2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah000393, Ah000394, Ah000399, Ah003949, Ah003953, Ah003954 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g071880, BVRB_5g113260 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg11627, Sbi_jg45701, Sbi_jg46774, Sbi_jg46778 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg10869, Seu_jg18452, Seu_jg20876, Seu_jg20880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001449, GOSA_00014071 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl33340, Sgl38687, Sgl45685, Sgl50446, Sgl67624, Sgl67625 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006113, gene:ENSEOMG00000027208 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4BG0011210, CQ.Regalona.r1.4BG0011390 ... |