Basic Information
Locus ID:
BVRB_4g071490
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 545464 | 552197 | - | BVRB_4g071490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 97,647.29 Da | 39.20 | 79.12 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 407 | 463 | 1.61354E-29 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 473 | 830 | 1.9E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 136 | 239 | 5.2E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 408 | 464 | 2.0E-9 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 296 | 831 | 2.25E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 397 | 465 | 1.37E-13 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 626 | 797 | 2.9E-221 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 278 | 385 | 2.4E-13 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 406 | 849 | 2.9E-221 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 69 | 235 | 7.7E-46 | IPR043151 |
| SMART | SM00439 | BAH_4 | 131 | 250 | 5.4E-14 | IPR001025 |
| SMART | SM00298 | chromo_7 | 407 | 466 | 4.8E-10 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 476 | 828 | 3.6E-31 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 295 | 838 | 44.117458 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 131 | 250 | 16.144577 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 408 | 464 | 13.498701 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 478 | 490 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 431 | 451 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 567 | 580 | 5.1E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 521 | 535 | 5.1E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 296 | 312 | 5.1E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology