Basic Information
Locus ID:
BVRB_3g065800
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26343811 | 26349183 | + | BVRB_3g065800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 55,732.69 Da | 48.54 | 64.14 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 33 | 118 | 1.73865E-46 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 268 | 332 | 1.7321E-23 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 34 | 118 | 1.3E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 268 | 335 | 8.6E-16 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 29 | 128 | 9.16E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 260 | 337 | 5.89E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 19 | 135 | 1.4E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 251 | 346 | 2.0E-22 | IPR036910 |
| SMART | SM00501 | bright_3 | 32 | 123 | 2.9E-25 | IPR001606 |
| SMART | SM00398 | hmgende2 | 267 | 336 | 1.7E-20 | IPR009071 |
| SMART | SM01014 | ARID_2 | 28 | 118 | 3.2E-28 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 268 | 335 | 16.264437 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 31 | 122 | 25.680412 | IPR001606 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 319 | 339 | 4.8E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 300 | 319 | 4.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 486 | - | - |
| Coils | Coil | Coil | 317 | 337 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010673418.2 | high mobility group B protein 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CMU6 | High mobility group B protein 15-like OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g065800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology