Basic Information
Locus ID:
BVRB_3g061970
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 21458761 | 21470684 | + | BVRB_3g061970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 200,645.92 Da | 48.75 | 67.77 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 1212 | 1294 | 7.70917E-28 | - |
| Pfam | PF00855 | PWWP domain | 1208 | 1294 | 5.4E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 1204 | 1333 | 5.54E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 1196 | 1301 | 1.1E-25 | - |
| SMART | SM00293 | PWWP_4 | 1208 | 1269 | 5.1E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 1210 | 1271 | 14.11253 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1657 | 1714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1696 | 1714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1662 | 1686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 629 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_010672904.1 | uncharacterized protein LOC104889395 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RBF0 | PWWP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_085150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology