Basic Information
Locus ID:
BVRB_3g059920
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17709567 | 17710957 | - | BVRB_3g059920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.08 | 45,556.68 Da | 38.96 | 64.20 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 133 | 305 | 3.5E-59 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 122 | 228 | 2.6E-30 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 229 | 303 | 4.2E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 116 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38930.1 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_048496482.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RNV5 | Ubiquitin fusion degradation protein 1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_050890 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology