Basic Information
Locus ID:
BVRB_3g059690
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17076206 | 17087480 | - | BVRB_3g059690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 128,732.91 Da | 63.93 | 58.19 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 724 | 853 | 1.16545E-60 | - |
| CDD | cd00201 | WW | 23 | 52 | 8.24068E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 736 | 844 | 8.9E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 23 | 52 | 4.5E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 529 | 699 | 1.7E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 6.16E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 577 | 860 | 9.81E-74 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 18 | 60 | 7.4E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 468 | 714 | 1.1E-84 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 715 | 885 | 6.6E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 760 | 844 | 2.7E-32 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.7E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 524 | 727 | 4.7E-64 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3687 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 739 | 883 | 24.974087 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 494 | 533 | 9.217726 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 536 | 710 | 30.80481 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 656 | 664 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1060 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1160 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 1128 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_010672591.1 | DEAD-box ATP-dependent RNA helicase 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8FHS8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology