Basic Information
Locus ID:
BVRB_3g059660
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 16962205 | 16966429 | + | BVRB_3g059660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 49,103.91 Da | 44.19 | 77.59 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 94 | 410 | 6.9E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 56 | 443 | 6.81E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 49 | 441 | 1.1E-116 | IPR012334 |
| SMART | SM00710 | pbh1 | 332 | 353 | 2500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 250 | 271 | 3200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 303 | 324 | 10.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 200 | 230 | 860.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 273 | 293 | 2400.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 280 | 293 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010672584.1 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology