Basic Information
Locus ID:
BVRB_3g058900
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14953817 | 14961251 | + | BVRB_3g058900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 33,301.96 Da | 48.35 | 68.57 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 36 | 121 | 1.23546E-40 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 38 | 121 | 1.4E-15 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 129 | 1.1E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 13 | 142 | 7.2E-23 | IPR036431 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 3.0E-21 | - |
| SMART | SM00501 | bright_3 | 35 | 126 | 1.4E-25 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 21.729759 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 168 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010672469.2 | high mobility group B protein 10 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q7P0 | ARID domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_211070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology