Basic Information
Locus ID:
BVRB_3g056200
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9394234 | 9396926 | - | BVRB_3g056200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 89,240.73 Da | 40.47 | 110.91 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 265 | 324 | 1.0E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 711 | 731 | 0.47 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 643 | 698 | 1.6E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 72 | 1.2E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 241 | 263 | 0.037 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 525 | 584 | 7.8E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 180 | 2.5E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 343 | 728 | 3.06E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 60 | 377 | 1.79E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 100 | 1.6E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 479 | 5.5E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 101 | 324 | 1.3E-57 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 480 | 762 | 1.1E-81 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 709 | 732 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 571 | 595 | 2.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 661 | 685 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 523 | 546 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 239 | 263 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 547 | 570 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 287 | 311 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 215 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 167 | 23.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 239 | 265 | 100.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 661 | 693 | 19.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 571 | 597 | 34.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 215 | 234 | 300.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 547 | 570 | 500.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 523 | 546 | 93.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 709 | 734 | 54.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 167 | 190 | 66.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 525 | 547 | 7.388525 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 711 | 733 | 7.33462 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 573 | 595 | 7.088198 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 549 | 572 | 7.095899 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 661 | 674 | 8.0E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 574 | 587 | 8.0E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_048496460.1 | - | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MM93 | LRRNT_2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |