Basic Information
Locus ID:
BVRB_3g054880
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7479865 | 7496029 | + | BVRB_3g054880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 67,071.13 Da | 49.90 | 65.40 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 2.98251E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 4.7E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 333 | 5.5E-10 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 566 | 591 | 3.06E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 275 | 1.25E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 1.03E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 215 | 6.36E-18 | - |
| Gene3D | G3DSA:2.20.25.20 | - | 225 | 268 | 4.7E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 269 | 523 | 2.3E-86 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 218 | 4.5E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 564 | 591 | 1.7E-5 | - |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 7.2E-23 | IPR002867 |
| SMART | SM00547 | zf_4 | 566 | 590 | 2.9E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 281 | 342 | 0.053 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 52.264076 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 564 | 591 | 8.738674 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 181 | 8.71251 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 568 | 587 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 558 | - | - |
| Coils | Coil | Coil | 347 | 374 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology