Basic Information
Locus ID:
BVRB_3g053990
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6356475 | 6361356 | - | BVRB_3g053990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 51,967.54 Da | 50.79 | 65.33 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 322 | 404 | 9.7E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 420 | 451 | 6.1E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 321 | 404 | 5.5E-24 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 100 | - | - |
| Coils | Coil | Coil | 320 | 352 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_010671700.1 | - | 0 |
| TrEMBL | A0A0K9QS75 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_153810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology