Basic Information
Locus ID:
BVRB_3g052960
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5244794 | 5248728 | + | BVRB_3g052960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 34,548.59 Da | 56.03 | 72.17 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 120 | 160 | 9.6E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 106 | 184 | 5.76E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 104 | 219 | 4.2E-14 | - |
| SMART | SM00256 | fbox_2 | 121 | 161 | 2.0E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 115 | 161 | 11.643516 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52880.1 | F-box family protein. | 0 |
| RefSeq | XP_010671576.2 | F-box protein At5g52880 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FLX3 | F-box protein At5g52880 OS=Arabidopsis thaliana OX=3702 GN=At5g52880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DXS5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2236 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3260 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007109, Ah018764 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15298, Sbi_jg56114 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26590 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01486, Sgl06650 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000596, gene:ENSEOMG00000028389 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015020, CQ.Regalona.r1.3AG0003920 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202780 |
| Apiaceae | Apium graveolens | 1 | Ag10G02561 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2514.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23442 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52880.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g030700.2N, BniB02g030840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1612 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15530 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2812 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00008652, Pov_00012705, Pov_00012727, Pov_00041044 ... |
| Poaceae | Echinochloa crus-galli | 2 | BH05.1811, CH04.1063 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0365870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0082780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016055 |
| Poaceae | Oryza coarctata | 2 | Oco09G014740, Oco10G014700 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11780.1, LOC_Os05g45040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G208900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504001, Pt_Chr0504090 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G016680, Chr12G020170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G550600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG051040, gene_TRIDC1BG058070 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G346700.1, TraesCS1B02G360600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb293490_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13853 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27259 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1923 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1451 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12743 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22459 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.412 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008598 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20537 |
| Salicaceae | Populus euphratica | 1 | populus_peu29594 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631988 |
| Solanaceae | Solanum chilense | 1 | SOLCI002240300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012580 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.6302_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2293 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09430.v3.1 |