Basic Information
Locus ID:
BVRB_3g052260
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4379795 | 4382352 | + | BVRB_3g052260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 41,847.31 Da | 49.73 | 84.25 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 25 | 82 | 5.0E-13 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 166 | 220 | 3.0E-6 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 314 | 358 | 5.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 361 | 2.78E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 362 | 2.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 316 | 357 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 316 | 358 | 12.341748 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010671482.3 | RING-H2 finger protein ATL20 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology