Basic Information
Locus ID:
BVRB_3g051890
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3864655 | 3875085 | + | BVRB_3g051890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 183,897.59 Da | 44.40 | 69.36 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1496 | 1599 | 4.2E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1035 | 1640 | 3.71E-31 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1419 | 1625 | 1.8E-65 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1028 | 1274 | 1.3E-85 | - |
| SMART | SM00384 | AT_hook_2 | 468 | 480 | 50.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 511 | 523 | 50.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 333 | 345 | 2.5 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1143 | 1616 | 4.0E-72 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 217 | 229 | 2.3 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 408 | 420 | 48.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 534 | 546 | 58.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 627 | 639 | 32.0 | IPR017956 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 723 | 769 | 9.863244 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 6 | 51 | 14.168949 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1150 | 1616 | 22.588232 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 428 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_019104049.1 | uncharacterized protein LOC104888238 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDM9 | WRC domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_078840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology