Basic Information
Locus ID:
BVRB_3g050080
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2213322 | 2223706 | + | BVRB_3g050080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 96,063.01 Da | 46.16 | 76.83 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 378 | 433 | 5.91122E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 379 | 432 | 4.3E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 445 | 803 | 3.0E-35 | IPR001525 |
| Pfam | PF01426 | BAH domain | 114 | 222 | 2.9E-11 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 376 | 433 | 6.23E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 265 | 803 | 1.66E-79 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 47 | 213 | 5.9E-48 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 597 | 769 | 6.3E-206 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 267 | 357 | 6.5E-31 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 374 | 820 | 6.3E-206 | - |
| SMART | SM00439 | BAH_4 | 111 | 228 | 3.3E-20 | IPR001025 |
| SMART | SM00298 | chromo_7 | 378 | 437 | 7.3E-9 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 446 | 800 | 1.9E-29 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 111 | 228 | 18.15353 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 379 | 432 | 11.924001 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 265 | 810 | 46.45163 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 402 | 422 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 449 | 461 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 492 | 506 | 8.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 266 | 282 | 8.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 538 | 551 | 8.9E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010671153.2 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9S2Y1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_005540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology