Basic Information
Locus ID:
BVRB_3g049740
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1898231 | 1902332 | + | BVRB_3g049740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 28,154.24 Da | 35.78 | 73.94 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 4.77665E-32 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 66 | 6.1E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 81 | 3.12E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 1.1E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.4E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.451734 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 264 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_010671105.2 | - | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KSR6 | RRM domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology