Basic Information
Locus ID:
BVRB_3g048750
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 852434 | 857615 | + | BVRB_3g048750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 38,976.38 Da | 27.35 | 96.24 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 203 | 270 | 1.3519E-8 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 48 | 114 | 3.46642E-8 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 137 | 194 | 4.80202E-7 | - |
| Pfam | PF00240 | Ubiquitin family | 55 | 116 | 3.0E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 213 | 270 | 3.6E-9 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 145 | 198 | 7.8E-6 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 275 | 342 | 8.0E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 273 | 343 | 8.11E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 124 | 199 | 8.25E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 40 | 116 | 2.19E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 198 | 271 | 5.41E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 201 | 271 | 1.5E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 124 | 200 | 2.1E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 27 | 114 | 7.2E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 272 | 344 | 1.0E-17 | - |
| SMART | SM00213 | ubq_7 | 273 | 344 | 6.0E-8 | IPR000626 |
| SMART | SM00213 | ubq_7 | 125 | 196 | 0.071 | IPR000626 |
| SMART | SM00213 | ubq_7 | 201 | 272 | 0.32 | IPR000626 |
| SMART | SM00213 | ubq_7 | 48 | 116 | 1.8E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 123 | 194 | 11.224428 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 203 | 270 | 12.92291 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 48 | 120 | 15.535957 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 273 | 346 | 14.425412 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 283 | 303 | 3.0E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 304 | 324 | 3.0E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 325 | 346 | 3.0E-7 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048497256.1 | polyubiquitin [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |