Basic Information
Locus ID:
BVRB_2g043770
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 39661349 | 39665782 | + | BVRB_2g043770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 32,718.28 Da | 56.11 | 63.19 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 40 | 121 | 2.0E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 223 | 281 | 5.2E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 175 | 218 | 4.1E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 112 | 169 | 1.7E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 37 | 111 | 5.1E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 223 | 2.09E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 239 | 8.9E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 247 | 285 | 2.1E-17 | - |
| SMART | SM00184 | ring_2 | 176 | 218 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 219 | 11.972923 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 33 | 109 | 24.569073 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 111 | 175 | 34.659779 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010670777.2 | - | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QPK0 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_155740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology