Basic Information
Locus ID:
BVRB_2g035230
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
B3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 15942386 | 15945241 | - | BVRB_2g035230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 45,059.64 Da | 34.11 | 90.89 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 52 | 9.9E-6 | IPR001810 |
| SUPERFAMILY | SSF101898 | NHL repeat | 100 | 358 | 6.8E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 86 | 2.75E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 50 | 1.4E-5 | - |
| SMART | SM00256 | fbox_2 | 12 | 53 | 0.0031 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 112 | 300 | 7.1E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33530.1 | F-box family protein. | 0 |
| RefSeq | XP_010669496.1 | F-box/kelch-repeat protein At3g23880 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C800 | Putative F-box protein At1g33530 OS=Arabidopsis thaliana OX=3702 GN=At1g33530 PE=4 SV=1 | 0 | |
| TrEMBL | Q1ZY06 | Fgenesh protein 115 OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_16224, gene_16225, gene_3309 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah018628, Ah018636, Ah026408, Ah034286 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035230, BVRB_2g035240, BVRB_3g052040, BVRB_7g158190 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg13919, Sbi_jg15090, Sbi_jg15094, Sbi_jg52019 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg26400, Seu_jg26406, Seu_jg9833 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020055, GOSA_00020064, GOSA_00022519 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl01329, Sgl01345, Sgl01359, Sgl06422, Sgl06435, Sgl06515 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015046, gene:ENSEOMG00000031880 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0004970, CQ.Regalona.r1.3BG0005000 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1531, evm.TU.LG01.1541, evm.TU.LG14.787 ... |