Basic Information
Locus ID:
BVRB_2g030840
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8202667 | 8224791 | + | BVRB_2g030840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 116,523.34 Da | 37.63 | 85.94 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 513 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 813 | 1013 | 1.23E-14 | IPR011048 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 449 | 875 | 3.53E-33 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 575 | 710 | 1.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 884 | 1026 | 1.0E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 720 | 883 | 1.2E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 342 | 542 | 1.1E-23 | IPR015943 |
| SMART | SM00668 | ctlh | 135 | 193 | 1.6E-8 | IPR006595 |
| SMART | SM00320 | WD40_4 | 790 | 830 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 644 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 872 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 513 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 557 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 917 | 958 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 422 | 466 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 783 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 970 | 1007 | 450.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 135 | 193 | 11.361097 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 840 | 872 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 840 | 872 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 513 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 479 | 513 | 9.256512 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_048495168.1 | - | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T1Q4T3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25213 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030840 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018332 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62347, Sgl66884 |