Basic Information
Locus ID:
BVRB_2g026760
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3549375 | 3553073 | - | BVRB_2g026760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 72,623.80 Da | 37.49 | 68.27 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 324 | 352 | 0.12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 290 | 316 | 0.86 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 355 | 384 | 4.6E-4 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 520 | 633 | 1.1E-36 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 255 | 416 | 1.1E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 355 | 387 | 1.2E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 352 | 386 | 10.577712 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 528 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_010692972.2 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LAU6 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology