Basic Information
Locus ID:
BVRB_2g025180
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1973473 | 1975340 | - | BVRB_2g025180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 48,537.00 Da | 84.20 | 58.54 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 233 | 274 | 2.71607E-24 | - |
| Pfam | PF13639 | Ring finger domain | 232 | 274 | 1.8E-9 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 328 | 438 | 1.4E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 12 | 49 | 6.5E-14 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 280 | 6.03E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 280 | 3.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 233 | 273 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 274 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 129 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_010690953.2 | probable E3 ubiquitin-protein ligase RHC2A [Beta vulgaris subsp. vulgaris] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QPG2 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_156260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology