Basic Information
Locus ID:
BVRB_2g024990
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1736743 | 1740979 | - | BVRB_2g024990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 56,257.29 Da | 48.71 | 72.10 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 214 | 490 | 1.06571E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 365 | 405 | 7.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 360 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 277 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 490 | 7.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 490 | 1.83E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 150 | 492 | 2.5E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 5.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 277 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 490 | 9.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 405 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 448 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 234 | 85.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 0.085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 328 | 369 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 458 | 491 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 328 | 360 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 286 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 370 | 414 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 491 | 14.217871 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 392 | 406 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 477 | 491 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 183 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology