Basic Information
Locus ID:
BVRB_1g013070
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 26201036 | 26229762 | - | BVRB_1g013070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 104,310.09 Da | 45.84 | 89.04 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 158 | 221 | 0.00656262 | - |
| CDD | cd02674 | Peptidase_C19R | 754 | 910 | 1.97295E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 312 | 909 | 2.0E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 35 | 138 | 1.4E-23 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 911 | 1.14E-105 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 138 | 1.44E-25 | IPR035927 |
| Gene3D | G3DSA:3.30.2230.10 | - | 10 | 150 | 4.0E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 702 | 919 | 7.8E-54 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 296 | 538 | 2.1E-65 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 235 | 4.4E-12 | - |
| SMART | SM00695 | dusp | 31 | 140 | 6.0E-28 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 312 | 912 | 55.266991 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 137 | 18.03055 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 313 | 328 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 854 | 871 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 294 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_010684133.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QI07 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_183250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology