Basic Information
Locus ID:
BVRB_1g009110
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
TRM112-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11979167 | 11979724 | + | BVRB_1g009110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 13,724.66 Da | 43.54 | 95.82 | -0.14 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22270.1 | Trm112p-like protein. Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth. | 0 |
| RefSeq | XP_010676515.1 | - | 0 |
| Q8LFJ5 | Multifunctional methyltransferase subunit TRM112 homolog A OS=Arabidopsis thaliana OX=3702 GN=TRM112A PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MJY4 | Multifunctional methyltransferase subunit TRM112-like protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23897 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1437, gene_14501 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003113, Ah023917 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009110, BVRB_5g108590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15737, Sbi_jg56529 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13753 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51448, Sgl56736 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004339 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0014160, CQ.Regalona.r1.5AG0011220 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G00199, Ag4G02743 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007010, scaffold002246G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711248 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1812.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G15152 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22270.1, AT1G78190.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009116m.g.v1.0, Thhalv10019322m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19780.v2.2, Sp5g33330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g030130.2N, BniB03g057540.2N, BniB04g037430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1345 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1447 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10570 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0152s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08640 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1497, evm.TU.LG09.796 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005999, Pov_00037773 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.4024 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0577830, gene-QOZ80_7BG0609180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0123800.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039509 |
| Poaceae | Oryza coarctata | 2 | Oco13G013070, Oco14G013790 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G355300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G014960, Chr28G012030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G322600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG020600, gene_TRIDC2BG024510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G163100.1.cds1, TraesCS2B02G188900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb109660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-334 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5585, Zma_g6883 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1787 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23030 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.996, evm.TU.Scaffold_8_RagTag.753 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13926 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6821 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.756 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010352 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17901, nbisL1-mrna-20028 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20309, nbisL1-mrna-9946 |
| Salicaceae | Populus euphratica | 3 | populus_peu14612, populus_peu14615, populus_peu32275 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627511 |
| Solanaceae | Solanum chilense | 1 | SOLCI003725400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016102 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_9633, gene_9902 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2790 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23110.v3.1 |