Basic Information
Locus ID:
BVRB_1g007770
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9069937 | 9081646 | - | BVRB_1g007770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 119,240.99 Da | 54.82 | 71.61 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 543 | 847 | 8.90645E-131 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 544 | 846 | 7.7E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 75 | 112 | 1.4E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 71 | 115 | 2.79E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 540 | 851 | 2.94E-84 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 537 | 859 | 1.9E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 64 | 117 | 2.5E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 544 | 849 | 50.531906 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 75 | 112 | 11.550815 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 75 | 112 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 545 | 560 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 989 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1084 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010675222.1 | ubiquitin carboxyl-terminal hydrolase 16 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology