Basic Information
Locus ID:
BVRB_1g007720
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8952701 | 8956145 | + | BVRB_1g007720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 35,444.47 Da | 36.76 | 62.29 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 60 | 4.03984E-17 | - |
| CDD | cd00325 | chitinase_GH19 | 70 | 299 | 9.85656E-115 | - |
| Pfam | PF00182 | Chitinase class I | 69 | 299 | 6.4E-131 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 23 | 59 | 6.1E-14 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 65 | 305 | 8.72E-109 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 61 | 2.75E-13 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 152 | 208 | 1.1E-120 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 74 | 305 | 1.1E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 61 | 3.5E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 22 | 59 | 2.3E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 306 | 1.5E-126 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 61 | 11.035005 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 87 | 109 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 212 | 222 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 45 | 52 | 7.1E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 7.1E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 7.1E-7 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_010675192.1 | - | 0 |
| P51613 | Basic endochitinase OS=Vitis vinifera OX=29760 GN=CHIT1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QAR7 | Chitin-binding type-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_205770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology