Basic Information
Locus ID:
BVRB_1g006670
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7404575 | 7407537 | + | BVRB_1g006670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 65,928.60 Da | 33.63 | 72.92 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 18 | 148 | 1.55141E-44 | IPR033734 |
| CDD | cd09612 | Jacalin | 459 | 587 | 2.98999E-40 | IPR033734 |
| CDD | cd09612 | Jacalin | 262 | 391 | 5.3226E-35 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 456 | 587 | 2.0E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 262 | 391 | 5.4E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 18 | 149 | 1.4E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 448 | 586 | 1.57E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 249 | 390 | 6.8E-37 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 8 | 149 | 9.81E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 242 | 390 | 6.4E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 147 | 5.6E-55 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 436 | 587 | 1.1E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 262 | 392 | 2.9E-33 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 18 | 149 | 2.4E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 456 | 588 | 5.1E-41 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 149 | 50.805065 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 445 | 588 | 48.103855 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 251 | 392 | 44.99934 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_048495353.1 | jacalin-related lectin 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKG9 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology