Basic Information
Locus ID:
BVRB_1g006650
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7393305 | 7397556 | + | BVRB_1g006650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 58,779.36 Da | 30.38 | 73.40 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 22 | 153 | 7.92832E-46 | IPR033734 |
| CDD | cd09612 | Jacalin | 373 | 505 | 1.22363E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 198 | 326 | 1.56218E-30 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 24 | 154 | 4.3E-37 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 373 | 505 | 1.9E-32 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 198 | 326 | 3.6E-25 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 188 | 326 | 1.96E-33 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 362 | 504 | 2.62E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 12 | 154 | 8.77E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 10 | 155 | 4.6E-53 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 180 | 326 | 2.8E-41 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 355 | 505 | 8.4E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 373 | 506 | 1.6E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 22 | 154 | 4.7E-44 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 198 | 328 | 6.7E-28 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 154 | 53.496895 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 362 | 506 | 49.979698 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 187 | 328 | 40.356636 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.3 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_048504273.1 | - | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R5P4 | Jacalin-type lectin domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology